rs30956719 SNP Detail

Summary

• ID
  rs30956719
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:63401673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTAAGCA GGTGGATGCC
  ACGCAGCTAA GAATGCTTTG TACCTTATCA ATGCATGGCA GGGGCCAAGA GGCAAATGTT
  TAGAGGGCAC TAGGATTTTT GCAGATGGAA CACTTTCCAG CACGAATGCT GTGGTGGGCA
  CAGTAACTGC TCTAAACTTT TTAAGACTCA GTATGCTTGA AATGTAAGGT GACAGACAAA
  W
  GCCAAGAAAA ATGTCTGGCC TGCTCTCAGG CAGGTGCAGG TGCCAGGATT AAAAGAAGGT
  AAAATCAACA TGGCTGCCCC ACCCCCTTCT CTGAAAGGGC TGGCCTAAAA GGGTGCTGGT
  AGATGGCCAG GTGCCTGGAA GGGCATTTGC AAGTAAACAC ATGGGCGGAG TGGGGGAGGT
  GTGGGGGAGG TAGTCCTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss49188725	NES12498539	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs30956719					SNP	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49188725	NES12498539	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:63401673 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6599	CpG island 6599	293 bp proximal
Fdft1	farnesyl diphosphate farnesyl transferase 1	within coordinates
Gm53861	predicted gene, 53861	1783 bp upstream
Rr297363	regulatory region 297363	within coordinates
Tssr129158	transcription start site region 129158	444 bp downstream
Tssr129159	transcription start site region 129159	701 bp downstream
Tssr129160	transcription start site region 129160	723 bp downstream
Tssr129161	transcription start site region 129161	743 bp downstream