rs30957336 SNP Detail

Summary

• ID
  rs30957336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86236524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGT TTGTGTCCCC GTCCTCCCTG
  Y
  AAGAGTAACA GATTGTAGAA AGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss44981738	mCV22889682	ABI	CRAMUS_MOUSE	f	SNP		C	C			T
ss49436567	NES12847860	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C		C	T	C	C	C	C	T
ss144875439	ENSMUSSNP576378	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30957336					SNP	C	C	C	C	C	T	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49436567	NES12847860	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86236524 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	1497 bp downstream
Rr366828	regulatory region 366828	within coordinates
Rr414520	regulatory region 414520	762 bp distal
Rr414521	regulatory region 414521	1304 bp proximal
Rr414522	regulatory region 414522	1863 bp proximal
Tssr7739	transcription start site region 7739	2000 bp downstream
Tssr7740	transcription start site region 7740	224 bp downstream
Tssr12766	transcription start site region 12766	399 bp upstream