rs30957687 SNP Detail

Summary

• ID
  rs30957687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:63430595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCTAGA GGCCACTGTG
  TATGAGTGGT CTCCAGCACA TCACAACCCC TGGTTTATGC TCAAACCCAG GGCATCTTGC
  AAGCATCCCT TTACCAACTG GGCTACGGCC TCAACGATGC TTAACTAAAT TCATTTGCGC
  TTAGATTCCC ATTCACACAC TCGGAAATGT GGTAACAGTT CACCTACTCT GACCTTCAGG
  R
  AAAGCTGCCG GGCTGGAAGC CAGCTTGCCA GGCACTGGTA CCCTAACCAC CTCTAAGTTC
  AGTCTTCCTG GCTACCGGCA GAGAAAGTTC TGGAAAATAC CGCCAGTATG ATGCAGCATG
  CAGCCCTAAT CTTAAATCTC TCCGGCAAGC CTTTAATCCC TCAAGGCCAG CCACACAACT
  ACACAGAGGC CCTGTCTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49188635	NES12497571	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30957687					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49188635	NES12497571	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:63430595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6601	CpG island 6601	293 bp proximal
Gm62940	predicted gene, 62940	459 bp upstream
Neil2	nei like 2 (E. coli)	within coordinates
Rr493637	regulatory region 493637	within coordinates
Rr493638	regulatory region 493638	385 bp proximal
Rr493639	regulatory region 493639	456 bp proximal
Rr493640	regulatory region 493640	470 bp proximal
Rr493641	regulatory region 493641	1879 bp proximal
Tssr129165	transcription start site region 129165	1209 bp upstream
Tssr129166	transcription start site region 129166	342 bp downstream