rs30957693 SNP Detail

Summary

• ID
  rs30957693
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:63430340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCAGGGT GGCTGTTAAG
  CCTCACTCTG TAGCCCAGGC TGGTCTTGAA CTCTGAACAA TCCTTCTGCC TCAGTCTCCC
  AAGTGTGAGC CATATACAAC TTCCTCCCTA CTAAGACATT TAAAATATAC TTTAATCGAA
  GAATCAGGAT GCCCCAGACA TCCTGAAAAT TCTCGTAGCT TCATAAATAA CACAATCAAT
  W
  ATGCGATTTT TCTTTCTATC TTGAGACAGG TTTGCCTATA TTTCAAATGC CAAGCTGGCC
  TAGAGGCCAC TGTGTATGAG TGGTCTCCAG CACATCACAA CCCCTGGTTT ATGCTCAAAC
  CCAGGGCATC TTGCAAGCAT CCCTTTACCA ACTGGGCTAC GGCCTCAACG ATGCTTAACT
  AAATTCATTT GCGCTTAGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49188641	NES12497568	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30957693					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49188641	NES12497568	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:63430340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6601	CpG island 6601	548 bp proximal
Gm62940	predicted gene, 62940	714 bp upstream
Neil2	nei like 2 (E. coli)	within coordinates
Rr295898	regulatory region 295898	160 bp distal
Rr297365	regulatory region 297365	60 bp proximal
Tssr129165	transcription start site region 129165	954 bp upstream
Tssr129166	transcription start site region 129166	597 bp downstream