rs30958265 SNP Detail

Summary

• ID
  rs30958265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:63430055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGCTGG CAGAACTCGG
  AAGCATGACA AGTAGACAGC AGCCAGGCAG GTCTACACGT CACCCCTCCC CTCTCTGTCC
  TCAACCATCC AAAGTCACCG GGAGCCACCA GGATGAGATC GCCTGGGTAG CCTACACCCA
  GACTTTACTG AGCAGGCGTT GTCCTCCCAT CCCCCACTCA AAGCTCTACC TAACCTCACC
  Y
  GCCACTTACC AACACCACGC TCATAAATTG AGGTAAAAAT CAACAAAGGC ATACAGCGGG
  TAGTTATTAT TGCAGTGTTT CTAAAAGCCA GGGTGGCTGT TAAGCCTCAC TCTGTAGCCC
  AGGCTGGTCT TGAACTCTGA ACAATCCTTC TGCCTCAGTC TCCCAAGTGT GAGCCATATA
  CAACTTCCTC CCTACTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49188643	NES12497720	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30958265					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49188643	NES12497720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:63430055 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6601	CpG island 6601	833 bp proximal
Gm62940	predicted gene, 62940	999 bp upstream
Neil2	nei like 2 (E. coli)	within coordinates
Rr295898	regulatory region 295898	within coordinates
Rr297365	regulatory region 297365	345 bp proximal
Tssr129165	transcription start site region 129165	669 bp upstream
Tssr129166	transcription start site region 129166	882 bp downstream