rs30958269 SNP Detail

Summary

• ID
  rs30958269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:63429872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTCTTGC TACTCCATAG
  CTCTAGGTGA GCTGAAACTA CGTAGTCCTA GCTGTCCTCA AACGTTCATT CCAACTCTCT
  TCTGACTGAT CCATACTTGG ATCTGGCTCT CTCGGGACCA CCTCAGGTAA AGGAGATCGG
  AACTAGTTAT GTGATCTCTA GAAATGGTTC TCTATCTGTA ACCACAGTGC TGGCAGAACT
  Y
  GGAAGCATGA CAAGTAGACA GCAGCCAGGC AGGTCTACAC GTCACCCCTC CCCTCTCTGT
  CCTCAACCAT CCAAAGTCAC CGGGAGCCAC CAGGATGAGA TCGCCTGGGT AGCCTACACC
  CAGACTTTAC TGAGCAGGCG TTGTCCTCCC ATCCCCCACT CAAAGCTCTA CCTAACCTCA
  CCCGCCACTT ACCAACACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49188647	NES12497718	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30958269					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49188647	NES12497718	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:63429872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6601	CpG island 6601	1016 bp proximal
Gm62940	predicted gene, 62940	1182 bp upstream
Neil2	nei like 2 (E. coli)	within coordinates
Rr493637	regulatory region 493637	616 bp proximal
Rr493638	regulatory region 493638	1108 bp proximal
Rr493639	regulatory region 493639	1179 bp proximal
Rr493640	regulatory region 493640	1193 bp proximal
Tssr129165	transcription start site region 129165	486 bp upstream
Tssr129166	transcription start site region 129166	1065 bp downstream