rs30959487 SNP Detail

Summary

• ID
  rs30959487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103687337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAT AACAACAAGA AAGAGTGGGT
  R
  TGGCAGTAGC TGGGACTATA GCTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45484559	mCV22763075	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss135564178	ENSMUSSNP4781395	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320858430	CHEV_3_103583944	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30959487					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103687337 () rs orientation: forward

Symbol	Name	Function Class
Gm43387	predicted gene 43387	1893 bp downstream
Hipk1	homeodomain interacting protein kinase 1	within coordinates
Rr367513	regulatory region 367513	1756 bp downstream
Tssr34851	transcription start site region 34851	1870 bp upstream
Tssr34852	transcription start site region 34852	1844 bp upstream
Tssr34853	transcription start site region 34853	1820 bp upstream
Tssr34854	transcription start site region 34854	1744 bp upstream
Tssr34855	transcription start site region 34855	1695 bp upstream