rs30961039 SNP Detail

Summary

• ID
  rs30961039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29981593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCA GTGGTTAAGA GTACTGACTG
  Y
  TCTTCCAGAG GTCCTGAGTT CAATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46462901	mCV22974559	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss148672362	ENSMUSSNP449701	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss322132956	CHEV_7_31067187	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30961039					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29981593 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	within coordinates
Cpgi18786	CpG island 18786	1148 bp distal
Rr400235	regulatory region 400235	1601 bp downstream
Rr644767	regulatory region 644767	1271 bp distal
Rr644768	regulatory region 644768	746 bp distal
Rr644769	regulatory region 644769	302 bp distal
Rr644770	regulatory region 644770	68 bp proximal
Tssr65668	transcription start site region 65668	1980 bp downstream
Tssr65669	transcription start site region 65669	1584 bp downstream
Tssr71721	transcription start site region 71721	1744 bp upstream
Wdr62	WD repeat domain 62	1749 bp upstream