rs30962092 SNP Detail

Summary

• ID
  rs30962092
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29980946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGTTCATTTT TTGGCTTATT TTTCTCTTTA AACGGTTTTC TGGGGCATCA CAGGTTGAGG
  TATGCAACGG TGTCCCCACC ACTAGAATGT CAGCCCCTCC CTGAAGCCAA CAAATTTTAT
  CCCATTTCCT GTTATTCCTA GGTTGCTAGA CTAATGCCTA ACACATACTA TTGTCCATCA
  AATGTTTGTT GGAAGGGTTT GATTTTTAGC CCAGAAGTCT GTTGGGGTTT GGGAAGCGTC
  GCACAAACCG CTTAAAAACC GATCTCAGTT AAACAGGACT GGTTTATTGA AACTCCCCCC
  M
  CCCAAAAAAA ACCCCCAAAA AACAAAAACC AGCAACAACA AAAAAACCCA ACTGATTGAT
  CACCCAGACT CGGAACTGTA AGCTACAACC CTAAACATTT CCGGGGCCAG TTTATATAGG
  GGGAAAAGGC ATAATGATCT GATAAGTAGG TGCAGGGAGA GCTGCAGCGT GGTTGGCCTT
  CTCCTAAGTT TTTAGTAGTT AAGACATAAC AGTTCAAGGT TGGAGAGATG GCTTAATGGT
  TAAGAGCACT GACTGCTTTT CCAGAGGTCC TGAGTTTGAT TCCCAGCAAC CACGTGGTGG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46463115	mCV22974585	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs30962092					SNP	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29980946 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	within coordinates
Cpgi18786	CpG island 18786	501 bp distal
Rr400235	regulatory region 400235	954 bp downstream
Rr644765	regulatory region 644765	1412 bp distal
Rr644766	regulatory region 644766	1457 bp distal
Rr644767	regulatory region 644767	624 bp distal
Rr644768	regulatory region 644768	99 bp distal
Rr644769	regulatory region 644769	324 bp proximal
Rr644770	regulatory region 644770	715 bp proximal
Tssr65667	transcription start site region 65667	1379 bp downstream
Tssr65668	transcription start site region 65668	1333 bp downstream
Tssr65669	transcription start site region 65669	937 bp downstream
Tssr71721	transcription start site region 71721	1097 bp upstream
Wdr62	WD repeat domain 62	1102 bp upstream