rs30965073 SNP Detail

Summary

• ID
  rs30965073
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050420 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  GTCCTACAGT GGACATTTGT AAATTTTCCA CCTTTTTAGT TTTCCTCGCC ATATTTCACC
  TCCGAAAGTG TGTATTTCTC ATTTTCCGTG ATTTTCAGTT TTCTTGCCAT ATTCCAGGTC
  CTACAGTGTG CATTTCTCAT TTTTCACGTT TTTCAGTGAT TTCATAATTT TTCAAGTCGT
  CAAGTGGATG TTGCTCATTT TCCATGATTT TCAGTTTTCT TGCCATATTT TATGTCCTAT
  AGTGGACTAT TCTAAATTTT CCACCTTTTT CATTTTTCCT CGCCATATTT CACCTCCAAA
  W
  GTGTGTACTT GTCATTTTCC GTGATTTTCT GTTTTCTCGC CATTTTCCAG GTCCTACAGT
  GTTCATTTCT CTTTTTTCAC GTTTTTCAAT GATTTCGTCA TTTTTCAAGT TGTCAACTGG
  ATGTGTCTCA TTTTCCATGA TTTTCAGTTT TCTTGCCATA TTCCATGTCC TACAGTGGAC
  ATTTATAAAT TTTCCACCTT TTTCAGTTTT CCTCGCCATA TTTCACCTCC TAAAATGTGT
  ATTTCTCATT TTCCGTGATT TTCAGTTTTC TCGCCATATT CCAGGTCCTA CAGTGTGCAT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss46464131	mCV25385336	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs30965073					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050420 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1906 bp downstream
Tssr4285	transcription start site region 4285	1881 bp upstream
Tssr4286	transcription start site region 4286	1777 bp downstream
Tssr4287	transcription start site region 4287	1742 bp upstream
Tssr4288	transcription start site region 4288	1714 bp downstream
Tssr4289	transcription start site region 4289	1619 bp upstream
Tssr4290	transcription start site region 4290	1612 bp downstream
Tssr4291	transcription start site region 4291	1532 bp upstream
Tssr4292	transcription start site region 4292	1496 bp downstream
Tssr4293	transcription start site region 4293	1461 bp upstream
Tssr4294	transcription start site region 4294	1459 bp downstream
Tssr4295	transcription start site region 4295	1386 bp upstream
Tssr4296	transcription start site region 4296	1423 bp downstream
Tssr4297	transcription start site region 4297	1359 bp upstream
Tssr4298	transcription start site region 4298	1341 bp downstream
Tssr4299	transcription start site region 4299	1301 bp downstream
Tssr4300	transcription start site region 4300	1263 bp downstream
Tssr4301	transcription start site region 4301	1245 bp upstream
Tssr4302	transcription start site region 4302	1233 bp upstream
Tssr4303	transcription start site region 4303	1178 bp downstream
Tssr4304	transcription start site region 4304	1149 bp upstream
Tssr4305	transcription start site region 4305	1080 bp downstream
Tssr4306	transcription start site region 4306	1061 bp upstream
Tssr4307	transcription start site region 4307	1040 bp downstream
Tssr4308	transcription start site region 4308	1008 bp upstream
Tssr4309	transcription start site region 4309	964 bp upstream
Tssr4310	transcription start site region 4310	917 bp downstream
Tssr4311	transcription start site region 4311	889 bp upstream
Tssr4312	transcription start site region 4312	809 bp downstream
Tssr4313	transcription start site region 4313	750 bp upstream
Tssr4314	transcription start site region 4314	738 bp downstream
Tssr4315	transcription start site region 4315	714 bp downstream
Tssr4316	transcription start site region 4316	687 bp upstream
Tssr4317	transcription start site region 4317	611 bp downstream
Tssr4318	transcription start site region 4318	587 bp upstream
Tssr4319	transcription start site region 4319	530 bp upstream
Tssr4320	transcription start site region 4320	466 bp downstream
Tssr4321	transcription start site region 4321	438 bp upstream
Tssr4322	transcription start site region 4322	339 bp downstream
Tssr4323	transcription start site region 4323	304 bp upstream
Tssr4324	transcription start site region 4324	274 bp downstream
Tssr4325	transcription start site region 4325	223 bp downstream
Tssr4326	transcription start site region 4326	185 bp upstream
Tssr4327	transcription start site region 4327	182 bp downstream
Tssr4328	transcription start site region 4328	100 bp downstream
Tssr4329	transcription start site region 4329	102 bp upstream
Tssr4330	transcription start site region 4330	1 bp upstream
Tssr4331	transcription start site region 4331	25 bp downstream
Tssr4332	transcription start site region 4332	131 bp downstream
Tssr4333	transcription start site region 4333	143 bp upstream
Tssr4334	transcription start site region 4334	165 bp downstream
Tssr4335	transcription start site region 4335	312 bp downstream
Tssr4336	transcription start site region 4336	316 bp upstream
Tssr4337	transcription start site region 4337	389 bp downstream