rs30965455 SNP Detail

Summary

• ID
  rs30965455
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:46963387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCA GCTATCAATT TATGTGTATC
  R
  TTGTCTATAT ACCTGTCTTT AATTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss44983123	mCV23237869	ABI	CRAMUS_MOUSE	f	SNP							G		A
ss47322000	NES11090281	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A		A	A	A	G		A	A
ss149066349	ENSMUSSNP3593159	ENSEMBL	ENSEMBL_Sanger	f	SNP									A
ss319712743	CHEV_1_46981072	CHEVERUD	SCREENING_POP	f	SNP												A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30965455					SNP	G	A	A	A	G	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47322000	NES11090281	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:46963387 () rs orientation: forward

Symbol	Name	Function Class
Rr371227	regulatory region 371227	1579 bp downstream
Rr410623	regulatory region 410623	949 bp proximal
Tssr11557	transcription start site region 11557	1529 bp downstream
Tssr11558	transcription start site region 11558	1558 bp downstream