rs30966346 SNP Detail

Summary

• ID
  rs30966346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:119996285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGGTTG GTTTGTCCCA
  TTACTTTGGG CCCATGGCAG GAACGTACAT CATTGTGTGA AAGCAGAAGA GGTCAATCCT
  CCCCATGTTG GCTGAGAAGC AAAGACCAGT AGCAAGGTCC AGGGTCCTAA TATCCCTTCA
  AGGAGATGCT CCTAATGACC TGAGTTCCCA TACCAGAGTC CACTTCCTAA ATGTCCCAAC
  R
  CCACTAATAC GACCACTGTA GAGACCGTCA AATCTTCAAT GTAGGATCCT TTGAGAGATA
  TTTCCTTGGG GGAGTGGAAG ATCTCATCGT ACATCTCATA CCTGTTGGGA TAAACTTCTT
  GTCTGCTGTG TACAGGTTTT CTTTGTATTA TTTAAATGTC GATTCCTGTA CCAGCAGAGA
  GTGGAGAACA GGCTATCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48001296	NES12011825	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30966346					SNP	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48001296	NES12011825	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:119996285 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D10Mit236	DNA segment, Chr 10, Massachusetts Institute of Technology 236			1560 bp distal
Gm67388	predicted gene, 67388			350 bp upstream
Irak3	interleukin-1 receptor-associated kinase 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr385391	regulatory region 385391			1935 bp upstream
Tssr3374	transcription start site region 3374			1 bp downstream
Tssr95979	transcription start site region 95979			329 bp upstream
Tssr95980	transcription start site region 95980			1830 bp upstream
Tssr99537	transcription start site region 99537			1544 bp upstream
Tssr99538	transcription start site region 99538			834 bp upstream
Tssr99539	transcription start site region 99539			796 bp upstream
Tssr99540	transcription start site region 99540			761 bp upstream
Tssr99541	transcription start site region 99541			274 bp upstream
Tssr99542	transcription start site region 99542			1061 bp downstream