rs30966350 SNP Detail

Summary

• ID
  rs30966350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:119997250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAGCTTC TGCGTGTTTA
  TCACCCAGAT TCTGTCTAGC TGGGCTATTA AACAGTGTTA AATTTAGCAT AGCAAGGTAA
  GTACCTGGGC TATTGTCTTG GAAACTACGA ATCTTTCTAC TCCTACTTGT CCTCAAGACA
  AGCTTGAGTC TCTCCTTTGA GTTTACTTAT CAAACCTAGT TCTCTAACCT AGTCACCGCT
  Y
  AAGCCCCGTC AACCCCTTGA CCATCACGTT CTGTCTTTGT CACCTCAATT TACTTTATTT
  CCAAATTCCA TCTGTTCTCC AGCCAACAAG CCAACCTTTT TCCCTCCCTC CCTCCCTCCC
  TCCCTCCCTC CCTCCCTTCC TTCCTCCCTT CCTTGGCTTC TGCTGTATGT GAGGCAGTTC
  TTTGCTTTGA CCCCCTTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48001300	NES12011715	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30966350					SNP	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48001300	NES12011715	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:119997250 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm67388	predicted gene, 67388			within coordinates
Irak3	interleukin-1 receptor-associated kinase 3			Intron
				Noncoding-Transcript-Variant
Rr385391	regulatory region 385391			970 bp upstream
Rr439941	regulatory region 439941			1515 bp proximal
Tssr3374	transcription start site region 3374			966 bp downstream
Tssr95979	transcription start site region 95979			614 bp downstream
Tssr95980	transcription start site region 95980			865 bp upstream
Tssr99538	transcription start site region 99538			1799 bp upstream
Tssr99539	transcription start site region 99539			1761 bp upstream
Tssr99540	transcription start site region 99540			1726 bp upstream
Tssr99541	transcription start site region 99541			1239 bp upstream
Tssr99542	transcription start site region 99542			96 bp downstream