rs30966541 SNP Detail

Summary

• ID
  rs30966541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:16805089 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  CCAATGCTAT CTCAAAAGTC CCCCACTAGC TCTCCCACCC ACTCCTACTT CTTAGCCCTG
  TCTTTCCCCT GTACTGAGGC ATATAAAGTT TGCACAACTA ATGGGCCTCT CTTTCCACTG
  ATGGCCGACT AGGCCATTTT CTGATTCATA TGCAGCTAGA GACACGAGCT CCAGGGGGGT
  ACTGGTTAGT TCATAATGTT GTTCCACCTA TAGGGTGCAA ATCCATTTAG CTCCTTGGGT
  ACTTTCTCTA GCTCCTCCAT TGGGGGCCCT GTGATCCATC CAATAGCTGA CTGTGAGCAT
  Y
  CACTTCTGTG TTTGCTAGGC CCCGTCATAG TCTCACAAGA GACAGCCATA TTTGGGTCCT
  TTCAGCAAAA TCTTGCTAGT GTATGCAATG GTGTCAGCGT TTGGAGACTG ATTATGGGAT
  GTATCCCCGG ATATGGCAGT CTCTAGATGG TCCATCCTTT CGTCACAGCT CCAAACTTTG
  TCTCTATAAT TTCTTCCATG GGTGTTCTGT TCCCAATTCT AAGAAGGGGC AAAGTGTCCA
  CACTTTGGTC TTCATTCTTC TTGAGTTTCA TGCGTTTAGC AAATTGTATC TTATATCTTG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44982273	mCV22616332	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30966541					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:16805089 () rs orientation: reverse

Symbol	Name	Function Class
Rr370925	regulatory region 370925	1759 bp upstream