rs30967116 SNP Detail

Summary

• ID
  rs30967116
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18707925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGATAAGAG CTCTGAGTCA CCAGTCTCCT CCTCAATCAG
  CAGTCCCAGG GCTATCAGGA AAGTGAAGTT TATAACGCAA TAAACACAAC TGAAGACTTG
  M
  TCCTCTGCTC TTCCGCAGCA CCAAATTTCA ACCCCAGGTT TTATGGCTAC TGGACATTTA
  GCCAGCATGG CATGGTCCAC TTTGCCCTGC TGGAGTGGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss44982948	mCV23325631	ABI	CRAMUS_MOUSE	f	SNP		A	A					C		A
ss50685052	NES13607298	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	C	A		C		C	C		C		C
ss146149680	ENSMUSSNP1734621	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss325733600	CHEV_19_18805051	CHEVERUD	SCREENING_POP	f	SNP													C		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs30967116					SNP	C	A	A	C	A	C	A	C	C	A	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50685052	NES13607298	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18707925 () rs orientation: forward

Symbol	Name	Function Class
Gm50202	predicted gene, 50202	1312 bp downstream
Gm59201	predicted gene, 59201	within coordinates
Rr544949	regulatory region 544949	607 bp proximal
Rr544950	regulatory region 544950	794 bp proximal
Tssr155454	transcription start site region 155454	51 bp upstream
Tssr155455	transcription start site region 155455	69 bp upstream
Tssr155456	transcription start site region 155456	97 bp upstream
Tssr155457	transcription start site region 155457	868 bp upstream