rs30967298 SNP Detail

Summary

• ID
  rs30967298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:25188445 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCAG GCTCTACAGT ACAGGGGACA
  Y
  CATAGAAAAG GTCCTTAGAG AAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss46463173	mCV23025031	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148110801	ENSMUSSNP3694040	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	G		A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs30967298					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25188445 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Prkag2	protein kinase, AMP-activated, gamma 2 non-catalytic subunit			Intron
				Noncoding-Transcript-Variant
Rr608456	regulatory region 608456			483 bp distal
Rr608457	regulatory region 608457			within coordinates
Rr608458	regulatory region 608458			149 bp proximal
Rr608459	regulatory region 608459			286 bp proximal
Rr608460	regulatory region 608460			1871 bp proximal