rs30968172 SNP Detail

Summary

• ID
  rs30968172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:119998924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCAGGTG AATGGTTTCG
  GTTCTCCTCT TTCAGAACTC TCTGGGACTG ACTCTTCTGT GCTCCCATCA TTGCTGCCCC
  ATTCCCAGGC TAGCTCTTGC TCCCTACCTA GCTGGAGACA CGAACATAAC CGAGTCCCCA
  TCTGGTACTG AGCACGGAAG AAGGGAGATG CTGCCCTCAG GTTACAGCCC TGCTCCAGGA
  Y
  GGGACACAGC GCAAGTCCTG GCATGCCCTG CCCTATTTGT TGGTGTCTTT GAAAAGCCAC
  CGCGGCTTCA GAGGCTTTTC CATGACATCA GTTAGAGCCG CGATAGCGCC AGTACCCCAA
  CAGCCCCTCC TCCCTCCTTT ACCCATGTGT TTGGTTCCTT TAATTTAATT AATTAATTTG
  GTTTTTCAAA ACAGGGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48001322	NES12011661	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30968172					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48001322	NES12011661	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:119998924 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm67388	predicted gene, 67388			within coordinates
Irak3	interleukin-1 receptor-associated kinase 3			Intron
				Noncoding-Transcript-Variant
Rr385391	regulatory region 385391			within coordinates
Rr439941	regulatory region 439941			within coordinates
Tssr95980	transcription start site region 95980			799 bp downstream
Tssr99542	transcription start site region 99542			1567 bp upstream