rs30969062 SNP Detail

Summary

• ID
  rs30969062
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54389594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGT CATAGAGCAC TGCGCTCCCC
  W
  GAGATTTGAG CCAGCTATCT TCTCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39240739	mCV23057461	ABI	CRAMUS_MOUSE	f	SNP		T					A		T
ss62393794	NES17237171	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T	T	T	T		A	T	T	T		T
ss139556904	ENSMUSSNP6664258	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss324635142	CHEV_14_54771812	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30969062					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393794	NES17237171	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54389594 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Gm62807	predicted gene, 62807	1016 bp upstream
Rr492143	regulatory region 492143	526 bp proximal
Rr492144	regulatory region 492144	892 bp proximal
Rr492145	regulatory region 492145	1027 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Tssr125542	transcription start site region 125542	1009 bp upstream
Tssr125543	transcription start site region 125543	1053 bp upstream
Tssr125544	transcription start site region 125544	1069 bp upstream
Tssr125545	transcription start site region 125545	1116 bp upstream
Tssr128540	transcription start site region 128540	727 bp upstream