rs30970325 SNP Detail

Summary

• ID
  rs30970325
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:144055348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTCT TTGACATCAA TATTGGCCAG
  K
  TAGTTTCCTA TTTTTCTCTG TCTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45197856	mCV23179155	ABI	CRAMUS_MOUSE	f	SNP		T	G					T		T
ss49688183	NES12980795	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	T	G		T	T	G	T	T	T	T	T	T
ss145634703	ENSMUSSNP2596831	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30970325					SNP	T	T	G	T	T	T	G	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49688183	NES12980795	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:144055348 () rs orientation: forward

Symbol	Name	Function Class
Rr12883	regulatory region 12883	53 bp proximal
Rr30963	regulatory region 30963	603 bp distal
Rr396359	regulatory region 396359	1805 bp downstream
Rr396360	regulatory region 396360	1070 bp downstream