rs30970327 SNP Detail

Summary

• ID
  rs30970327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:144055112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTCTCCT GAAGCTGCTA
  CAAATCTGTT CTCTTGGCTT TCCTCTGGAG TCAGCAGTTA TACTGTTGGC CTTCGGACCT
  ATAGCCCGGA ATTGCAAAGA ATGATGGTAG TACTTAATTA CCACATTCTC TAGAGCATGC
  AGTAGAGCAC CCAGTCCTAA CTGATTAGTT AGGATCTCAC TGTTCTCTCA GATGTGGTAG
  Y
  GACAAAGACT TCCTTTGAGA GGTAGAGTAC TTTGAGGACT GGGTCATGGA TGCACCCTTA
  TGGAGATTAC TTGCATCGGC TTAGCTAGGG AGATAGGCAT TACCATGGTA GCTCTGTTTT
  TCTGCTTTTT ATTTTTATGT TTGCAGTAGA GTTTCTGGAC CACATGGGAA GGGTAGGTTT
  CAATTATAAA TTCAGAAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49688185	NES12980838	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30970327					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49688185	NES12980838	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:144055112 () rs orientation: forward

Symbol	Name	Function Class
Rr12883	regulatory region 12883	289 bp proximal
Rr30963	regulatory region 30963	367 bp distal
Rr396359	regulatory region 396359	1569 bp downstream
Rr396360	regulatory region 396360	834 bp downstream