rs30970330 SNP Detail

Summary

• ID
  rs30970330
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:144054961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGT TCTCTTGGCT TTCCTCTGGA
  R
  TCAGCAGTTA TACTGTTGGC CTTCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44991257	mCV23179167	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss49688188	NES12980835	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A		G	G	A	A	G	A	G	G	G
ss145634691	ENSMUSSNP2113217	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30970330					SNP	G	G	A	G	G	G	A	G	G	G	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49688188	NES12980835	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:144054961 () rs orientation: forward

Symbol	Name	Function Class
Rgs13	regulator of G-protein signaling 13	1851 bp upstream
Rr12883	regulatory region 12883	440 bp proximal
Rr30963	regulatory region 30963	216 bp distal
Rr396359	regulatory region 396359	1418 bp downstream
Rr396360	regulatory region 396360	683 bp downstream
Tssr14104	transcription start site region 14104	1942 bp upstream