rs30970333 SNP Detail

Summary

• ID
  rs30970333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:144054821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAAGTCT GGACCCAGGA
  CAGTACAGAC CTGTTTCTCG AGTTGTCCGG TCTGCTTTGT TGATAAACAG ACGTGTAACT
  TATTTTGGCT TTTGACTTGT ATAAATATCA AGTATAGTGG CAACAATAGT TAGATTATTG
  GGTATTCAAC AATTCAACAC TGTTAACTAC ACAAAAGGCA TACAGACAGC ATGCAAGCTA
  R
  CAGCCAGCTT TATCTGTATT AAAGGTGCCT TTAATTATAA CCATTATCAT ACCATTCCAT
  AAAGATCAGT CACCAACTCC AGTCATTCTT AATTTCTCCT GAAGCTGCTA CAAATCTGTT
  CTCTTGGCTT TCCTCTGGAG TCAGCAGTTA TACTGTTGGC CTTCGGACCT ATAGCCCGGA
  ATTGCAAAGA ATGATGGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49688191	NES12980830	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30970333					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49688191	NES12980830	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:144054821 () rs orientation: forward

Symbol	Name	Function Class
Rgs13	regulator of G-protein signaling 13	1711 bp upstream
Rr12883	regulatory region 12883	580 bp proximal
Rr30963	regulatory region 30963	76 bp distal
Rr396359	regulatory region 396359	1278 bp downstream
Rr396360	regulatory region 396360	543 bp downstream
Tssr14103	transcription start site region 14103	1887 bp upstream
Tssr14104	transcription start site region 14104	1802 bp upstream