rs30970345 SNP Detail

Summary

• ID
  rs30970345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:120067914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTATTA CATTATCATA
  TTCAAAAATA GGGTATCAAG AGCCTGAGGA AGAGTCAACT TCTGTTTCTT GTTGGGTGGC
  TCAAAACCAA CTCCCAAGGA TGCGCCCTCT TGTGGCCGTC ACTGGCACCG ACATTCTATG
  CACACCTTCC CACGCACTAA TAACTAAAAT AGTCTTAAAA AGGCCATCAG TGGATCTTAC
  Y
  AGTAGTACTT ACTTGAAGTG TTTATTTTTT TATAATTCAT AATAAATGAT ATTTTGCGTG
  GAGATCTTGG AGTTTGACAT TTTCTTTTAT ATATCATTAG GGTTTTCAGA CACTGAGAAG
  ACCACCAGCC TTTAGCTCAG GTGGACTATT ACATGTATAG ATTATTGTGT AAAACAAGTG
  ATCCTCAATT TCAATATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48002056	NES12007595	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30970345					SNP	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48002056	NES12007595	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:120067914 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Llph	LLP homolog, long-term synaptic facilitation (Aplysia)			mRNA-UTR
				Noncoding-Transcript-Variant
Rr385393	regulatory region 385393			1587 bp upstream
Rr402292	regulatory region 402292			within coordinates
Rr439960	regulatory region 439960			within coordinates
Rr439961	regulatory region 439961			81 bp distal
Rr439962	regulatory region 439962			334 bp proximal
Rr439963	regulatory region 439963			1701 bp proximal
Tssr95994	transcription start site region 95994			1646 bp downstream