rs30970346 SNP Detail

Summary

• ID
  rs30970346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:120068685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGT TAGTTGAATC TGCCTCTGTA
  Y
  GCTTTGTTCA TTCCAACTAT TTAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48002058	NES12007531	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T		T	T	T		C
ss323509304	CHEV_10_119669836	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30970346					SNP	C	T	T	T	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48002058	NES12007531	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:120068685 () rs orientation: forward

Symbol	Name	Function Class
Llph	LLP homolog, long-term synaptic facilitation (Aplysia)	709 bp downstream
Rr385393	regulatory region 385393	816 bp upstream
Rr402292	regulatory region 402292	601 bp downstream
Rr439960	regulatory region 439960	632 bp distal
Rr439961	regulatory region 439961	852 bp distal
Rr439962	regulatory region 439962	416 bp distal
Rr439963	regulatory region 439963	930 bp proximal
Rr439964	regulatory region 439964	1394 bp proximal
Rr439965	regulatory region 439965	1810 bp proximal