rs30970350 SNP Detail

Summary

• ID
  rs30970350
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:120068779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACACTGA TGGGCGTTAG
  CTAACTTAGT ACTGTTTTAT GAAGAAACCT AGAATTAGTC TGGCTACATA CCAGTGAGAT
  GAGTGTTAGT TGAATCTGCC TCTGTACGCT TTGTTCATTC CAACTATTTA AATTTAGCGT
  TCCATCTGAA GTTTTATTCT AGTCATATCC ACCACCTTAT TGTGCTGAAT AAAACCAGGG
  R
  CTTTGCAGAT ACTAGAAATG TATCTGCTCA AAAAAAAAAA TGTATCCCTC CAGGAAAGAA
  AAATGTATAA GAGTAAAGTT ACTTGGCCCT GAGACCTCAA AGTACCAGGC ATGCATGTGG
  CCAAATGCTA CAGAAGGAAG CACAAAATGA TGCCAGGAGA CGCTTAAAAT CAGTGTAATG
  GTCCCTCCTC AATCCACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48002062	NES12007533	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30970350					SNP	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48002062	NES12007533	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:120068779 () rs orientation: forward

Symbol	Name	Function Class
Llph	LLP homolog, long-term synaptic facilitation (Aplysia)	803 bp downstream
Rr385393	regulatory region 385393	722 bp upstream
Rr402292	regulatory region 402292	695 bp downstream
Rr439960	regulatory region 439960	726 bp distal
Rr439961	regulatory region 439961	946 bp distal
Rr439962	regulatory region 439962	510 bp distal
Rr439963	regulatory region 439963	836 bp proximal
Rr439964	regulatory region 439964	1300 bp proximal
Rr439965	regulatory region 439965	1716 bp proximal