rs30971013 SNP Detail

Summary

• ID
  rs30971013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68922149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAATTTCA CTCTAAATTT
  GGTGCTACTA GATGTCAGAT TATGATACTG TATAGAACTG TTAAAAAGAG CACCTGCTAG
  CATGGCTTGA TGGTGCATGC CTTAAATCCT TAGTAGGTAA TGACAGAGCT CAAGTTCAAG
  GCCAGCATGG GCTACTTAGA GAACCCTGTC TTAAAAATCA GTACAAAGTA CACCTGCCAT
  Y
  GAGTAAATTT TAAAATGTTA AATGCAATTC TTTTTCTTTG GTACAATTTA GCCTAATTTT
  TAAGGTTGAG CCATACATTG ATAAAAATTG AATCACTGAA ATATCTTAAT ATGTAATTTC
  TGTTTTTTAG CCATTTGTCT GTCCCTGAGC ATCCCATCTC CCACTCCCGT GCCTTTTCCT
  TTGCTGTTAC AATGCTTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47003743	NES10781870	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30971013					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47003743	NES10781870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68922149 () rs orientation: forward

Symbol	Name	Function Class
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29518	transcription start site region 29518	1271 bp upstream
Tssr29519	transcription start site region 29519	1858 bp upstream
Tssr29520	transcription start site region 29520	1876 bp upstream