rs30971038 SNP Detail

Summary

• ID
  rs30971038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:144054669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCTGAATT TCTTTCCAGT GTCTTATCTC
  CCAGAACAAC TACTGCTTGT CTACATTGAC ACACTGCCCA GATGACCAGA AATGTGGCCC
  AAACAATTGC CACTGAAAGT CTGGACCCAG GACAGTACAG ACCTGTTTCT CGAGTTGTCC
  R
  GTCTGCTTTG TTGATAAACA GACGTGTAAC TTATTTTGGC TTTTGACTTG TATAAATATC
  AAGTATAGTG GCAACAATAG TTAGATTATT GGGTATTCAA CAATTCAACA CTGTTAACTA
  CACAAAAGGC ATACAGACAG CATGCAAGCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49688196	NES12980821	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G		G	G	G	G		G
ss320011874	CHEV_1_146026061	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30971038					SNP	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49688196	NES12980821	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:144054669 () rs orientation: forward

Symbol	Name	Function Class
Rgs13	regulator of G-protein signaling 13	1559 bp upstream
Rr12883	regulatory region 12883	732 bp proximal
Rr30963	regulatory region 30963	within coordinates
Rr396359	regulatory region 396359	1126 bp downstream
Rr396360	regulatory region 396360	391 bp downstream
Tssr14103	transcription start site region 14103	1735 bp upstream
Tssr14104	transcription start site region 14104	1650 bp upstream