rs30971039 SNP Detail

Summary

• ID
  rs30971039
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:144054641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGGGAG ATTGCTATCT
  GCTGCTTTCG TGAACTCTGG GTCCTTGCTT CTTAGCCTTC TATTAATCTT GGCTCCTTCT
  GCTGAATTTC TTTCCAGTGT CTTATCTCCC AGAACAACTA CTGCTTGTCT ACATTGACAC
  ACTGCCCAGA TGACCAGAAA TGTGGCCCAA ACAATTGCCA CTGAAAGTCT GGACCCAGGA
  S
  AGTACAGACC TGTTTCTCGA GTTGTCCGGT CTGCTTTGTT GATAAACAGA CGTGTAACTT
  ATTTTGGCTT TTGACTTGTA TAAATATCAA GTATAGTGGC AACAATAGTT AGATTATTGG
  GTATTCAACA ATTCAACACT GTTAACTACA CAAAAGGCAT ACAGACAGCA TGCAAGCTAA
  CAGCCAGCTT TATCTGTATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49688197	NES12980818	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30971039					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49688197	NES12980818	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:144054641 () rs orientation: forward

Symbol	Name	Function Class
Rgs13	regulator of G-protein signaling 13	1531 bp upstream
Rr12883	regulatory region 12883	760 bp proximal
Rr30963	regulatory region 30963	within coordinates
Rr396359	regulatory region 396359	1098 bp downstream
Rr396360	regulatory region 396360	363 bp downstream
Tssr14103	transcription start site region 14103	1707 bp upstream
Tssr14104	transcription start site region 14104	1622 bp upstream