rs30971040 SNP Detail

Summary

• ID
  rs30971040
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:144054618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGGCAG CTGTTGCTGT
  CGTTTGGAGG GAGATTGCTA TCTGCTGCTT TCGTGAACTC TGGGTCCTTG CTTCTTAGCC
  TTCTATTAAT CTTGGCTCCT TCTGCTGAAT TTCTTTCCAG TGTCTTATCT CCCAGAACAA
  CTACTGCTTG TCTACATTGA CACACTGCCC AGATGACCAG AAATGTGGCC CAAACAATTG
  M
  CACTGAAAGT CTGGACCCAG GACAGTACAG ACCTGTTTCT CGAGTTGTCC GGTCTGCTTT
  GTTGATAAAC AGACGTGTAA CTTATTTTGG CTTTTGACTT GTATAAATAT CAAGTATAGT
  GGCAACAATA GTTAGATTAT TGGGTATTCA ACAATTCAAC ACTGTTAACT ACACAAAAGG
  CATACAGACA GCATGCAAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49688198	NES12980816	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30971040					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49688198	NES12980816	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:144054618 () rs orientation: forward

Symbol	Name	Function Class
Rgs13	regulator of G-protein signaling 13	1508 bp upstream
Rr12883	regulatory region 12883	783 bp proximal
Rr30963	regulatory region 30963	within coordinates
Rr396359	regulatory region 396359	1075 bp downstream
Rr396360	regulatory region 396360	340 bp downstream
Tssr14103	transcription start site region 14103	1684 bp upstream
Tssr14104	transcription start site region 14104	1599 bp upstream