rs30971052 SNP Detail

Summary

• ID
  rs30971052
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:120069804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAAGAGCA GTTAAGGAAA ACGCCAGACT TCTGACCTCC
  GCATCCACCC ATCCGCCCTG CCCCAGGTTA CCGGAACCCC TATGGGAAGT GCTTTGAGTC
  W
  GGCTTTAGTG TGTCAAGTCC TCACAGCTTT TGAACAGTGA CTGCCACGAG TGAGTCTCAG
  CCCTGAGTTC CCAGACAGTA CTGCTGGCAC GGTGGGTCTG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48002074	NES12007418	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30971052					SNP	A	A	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48002074	NES12007418	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:120069804 () rs orientation: forward

Symbol	Name	Function Class
Llph	LLP homolog, long-term synaptic facilitation (Aplysia)	1828 bp downstream
Rr385393	regulatory region 385393	within coordinates
Rr402292	regulatory region 402292	1720 bp downstream
Rr439960	regulatory region 439960	1751 bp distal
Rr439961	regulatory region 439961	1971 bp distal
Rr439962	regulatory region 439962	1535 bp distal
Rr439963	regulatory region 439963	within coordinates
Rr439964	regulatory region 439964	275 bp proximal
Rr439965	regulatory region 439965	691 bp proximal