rs30971797 SNP Detail

Summary

• ID
  rs30971797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68922329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACAAAGTA CACCTGCCAT
  CGAGTAAATT TTAAAATGTT AAATGCAATT CTTTTTCTTT GGTACAATTT AGCCTAATTT
  TTAAGGTTGA GCCATACATT GATAAAAATT GAATCACTGA AATATCTTAA TATGTAATTT
  CTGTTTTTTA GCCATTTGTC TGTCCCTGAG CATCCCATCT CCCACTCCCG TGCCTTTTCC
  Y
  TTGCTGTTAC AATGCTTACA GAGCAGGGAA GCGACAGAAT TTTCTTCATT CGAGTCAATA
  AGTTACCTGG AAATCAGCCT TAGCTGCTGC TTGTAGGTTT TTGTTTGTTG ATTTTTTTTT
  CCTTTTTAAG TAATCAAAGA TTTTAGTTAT AGTTTATAGT TGATAGATTG ATTACAAACA
  GAAGATTTCT TGCATAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47003747	NES10781872	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30971797					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47003747	NES10781872	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68922329 () rs orientation: forward

Symbol	Name	Function Class
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29518	transcription start site region 29518	1091 bp upstream
Tssr29519	transcription start site region 29519	1678 bp upstream
Tssr29520	transcription start site region 29520	1696 bp upstream