rs30971799 SNP Detail

Summary

• ID
  rs30971799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68922334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTACACCT GCCATCGAGT
  AAATTTTAAA ATGTTAAATG CAATTCTTTT TCTTTGGTAC AATTTAGCCT AATTTTTAAG
  GTTGAGCCAT ACATTGATAA AAATTGAATC ACTGAAATAT CTTAATATGT AATTTCTGTT
  TTTTAGCCAT TTGTCTGTCC CTGAGCATCC CATCTCCCAC TCCCGTGCCT TTTCCTTTGC
  Y
  GTTACAATGC TTACAGAGCA GGGAAGCGAC AGAATTTTCT TCATTCGAGT CAATAAGTTA
  CCTGGAAATC AGCCTTAGCT GCTGCTTGTA GGTTTTTGTT TGTTGATTTT TTTTTCCTTT
  TTAAGTAATC AAAGATTTTA GTTATAGTTT ATAGTTGATA GATTGATTAC AAACAGAAGA
  TTTCTTGCAT AGCATGTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47003749	NES10781874	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30971799					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47003749	NES10781874	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68922334 () rs orientation: forward

Symbol	Name	Function Class
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29518	transcription start site region 29518	1086 bp upstream
Tssr29519	transcription start site region 29519	1673 bp upstream
Tssr29520	transcription start site region 29520	1691 bp upstream