rs30971955 SNP Detail

Summary

• ID
  rs30971955
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:120069861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACGTGAA AGAGCTCAAG
  TTCAGAAAAA ACCGGAAGTG ATATCAAAGA GCAGTTAAGG AAAACGCCAG ACTTCTGACC
  TCCGCATCCA CCCATCCGCC CTGCCCCAGG TTACCGGAAC CCCTATGGGA AGTGCTTTGA
  GTCAGGCTTT AGTGTGTCAA GTCCTCACAG CTTTTGAACA GTGACTGCCA CGAGTGAGTC
  W
  CAGCCCTGAG TTCCCAGACA GTACTGCTGG CACGGTGGGT CTGTCTGTCC ATCTCGGGAT
  TTTGGCAGAA TATCTAGAGT GGACTTTTGA AATCGGTTCA GGGGTGTGAT AAGCCCTTTA
  TCGCTTTTAA CCCATCGAAT ACGTGGGGAA GCACTTTAAT CTTAGTTAAA CACAGCTTCT
  CCAAGTTTGT TTTTAATGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48002078	NES12007420	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30971955					SNP	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48002078	NES12007420	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:120069861 () rs orientation: forward

Symbol	Name	Function Class
Llph	LLP homolog, long-term synaptic facilitation (Aplysia)	1885 bp downstream
Rr385393	regulatory region 385393	within coordinates
Rr402292	regulatory region 402292	1777 bp downstream
Rr439960	regulatory region 439960	1808 bp distal
Rr439962	regulatory region 439962	1592 bp distal
Rr439963	regulatory region 439963	within coordinates
Rr439964	regulatory region 439964	218 bp proximal
Rr439965	regulatory region 439965	634 bp proximal