rs30971960 SNP Detail

Summary

• ID
  rs30971960
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:120070157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAGGGGT GTGATAAGCC
  CTTTATCGCT TTTAACCCAT CGAATACGTG GGGAAGCACT TTAATCTTAG TTAAACACAG
  CTTCTCCAAG TTTGTTTTTA ATGCTGTCCA GAGAATTGCT GTAAAACCAC CAGAGGGCGC
  TCAAGCCAAG CAGGAAGTCA CTTGGAATCA CACAAGGACG CTTTAGAAGC AGAATGGAAC
  W
  ATTTTTGTTC CCTTTAAAAA TATTAAATAT ACGTAAGACT AATAAAGATA TAAATTTAAA
  ATTATTAACT CATCTAATTG ATCCAGAGGC CTATGATTAT GCTGCTAATA TTATCTACAC
  TTGGGGAAAC TGAGGCACGG GAGTCAACGT AGCTAAAACC AGGACTGCTT TTTCAAAGCA
  TGCATTCTCA CGGAGCCTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
ss48002084	NES12007423	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
rs30971960					SNP	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48002084	NES12007423	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:120070157 () rs orientation: forward

Symbol	Name	Function Class
Rr385393	regulatory region 385393	22 bp downstream
Rr439962	regulatory region 439962	1888 bp distal
Rr439963	regulatory region 439963	within coordinates
Rr439964	regulatory region 439964	57 bp distal
Rr439965	regulatory region 439965	338 bp proximal