rs30971988 SNP Detail

Summary

• ID
  rs30971988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:144053019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTACCAA CTCTTCTACT
  GAATCTCATA CTCACAAATA TATCCCGTGG AGCAGTCTAC CAAACTACAT TTTATTTTCT
  CCTTGTTACG ATCCTTTTGA AATCAGGCTC TGAAATTGCA CGAGACACCA AGTACTTTAT
  TTTTCCTGGC ATAAAAACAC GCCACTGTCT GTATAATTAC CTTCTATGGC ACTCCGGGTC
  Y
  CTGTGCTATG AAATTCTAGT TTTACAGACA CGTATCTATG CAAAGAGAGG TTTTTTGAAT
  ATGGAAAGTA GTGCTGTGGC ATTGCAATGC CTTGCTGATA AAAGAGGTTT TTATCTAAAC
  TTATCAGAAC ATCTGACATG TCCAGATGGC TGGAAGCAGC AGCTCTGGAG AATTTTCAAC
  TGTTGTAGTC AAAACTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49688206	NES12980894	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30971988					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49688206	NES12980894	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:144053019 () rs orientation: forward

Symbol	Name	Function Class
Rgs13	regulator of G-protein signaling 13	within coordinates
Rr30963	regulatory region 30963	within coordinates
Rr396359	regulatory region 396359	224 bp upstream
Rr396360	regulatory region 396360	958 bp upstream
Tssr14103	transcription start site region 14103	85 bp upstream
Tssr14104	transcription start site region 14104	within coordinates