rs30971989 SNP Detail

Summary

• ID
  rs30971989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:144052882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATCTAA GCCAAGAATG
  AAATATGTAT TTACAATTTT GTTTATTTCC TGGAAAAAAA ATACCTTACA TGCACTGCTA
  CAGCTCAGGT ACTGAAGTCA GTACCCATTA GGAATTATAT CAAGACAACA TTCTTCTATT
  TTACCAACTC TTCTACTGAA TCTCATACTC ACAAATATAT CCCGTGGAGC AGTCTACCAA
  R
  CTACATTTTA TTTTCTCCTT GTTACGATCC TTTTGAAATC AGGCTCTGAA ATTGCACGAG
  ACACCAAGTA CTTTATTTTT CCTGGCATAA AAACACGCCA CTGTCTGTAT AATTACCTTC
  TATGGCACTC CGGGTCCCTG TGCTATGAAA TTCTAGTTTT ACAGACACGT ATCTATGCAA
  AGAGAGGTTT TTTGAATATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49688207	NES12980889	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30971989					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49688207	NES12980889	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:144052882 () rs orientation: forward

Symbol	Name	Function Class
Rgs13	regulator of G-protein signaling 13	within coordinates
Rr30963	regulatory region 30963	within coordinates
Rr396359	regulatory region 396359	361 bp upstream
Rr396360	regulatory region 396360	1095 bp upstream
Tssr14103	transcription start site region 14103	41 bp downstream
Tssr14104	transcription start site region 14104	115 bp downstream