rs30972518 SNP Detail

Summary

• ID
  rs30972518
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69025417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGGTTGG TTTCACCATG
  TTCCTGTCTG TGGTCTCCTG AGTGGAGCTG AGATTATAGG TGTGCATATC ACACAGAGTT
  TACATTAAGT TTGAAGTAAA TTAAATTTAT AGTAAAAGTG AAAAGGAACC AAACTTCCTT
  CTGATACTAT TTTCAATAGT CAAGCTACTC ATATTAACAG CAAATGTCTA TGACTTGAAA
  W
  TTATTATGGA TACTAGACAG TGTGAATTAA AAGTGTTTTC TAATGCTGTA GAGATGGCTC
  AGTGGTTAAG AGCACTGGCT GATCTACCCA GTTCGATTTC CATCACTCAC ATGGCCCCTT
  ACAGCCATCT GTAACTCTAG TCCCAGGCAA TCTGATGCCC TATTCAGACA CTGTACACAT
  GTGGTAGGTA CACAGACATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47004430	NES10777951	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30972518					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47004430	NES10777951	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69025417 () rs orientation: forward

Symbol	Name	Function Class
Gm37558	predicted gene, 37558	1658 bp downstream
Kpna4	karyopherin subunit alpha 4	Intron
Rr578128	regulatory region 578128	790 bp proximal