rs30972657 SNP Detail

Summary

• ID
  rs30972657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68923326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGTGGCT CACCACCATC
  CGTAATGAGA TCTGATGCCC TCTTCTGGGA TGTCTGAAGG CAGCTGCAGT GTACTTACAT
  ATAATAAATG AATAAATCTT TAAAAAAAAG AAAACCACTA GATTGGGCAC CTCTTTATAT
  ATGTGGGTAT TCTTAAATAT ATATGTGTGA TTTTAGACCT TTTACATAAA ATATCCTTGA
  R
  CTACTTGTTA AGTATCCTTT GACTGGGATT ACCCTGTTCT CACTGAAGAG AGTTAGCTGC
  TGTGTGTATA CAAAGTGTAT GAATGTGACT CTCTTAAAGG GTGAAGTTGA ACAGATTGCT
  ATGATGAAAC CCAAAGGCCA GACTGAACAT GATGAAGGTA TGCTTGAGTA TTTAGAAGAT
  ATAATTGGCT GTGGACGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47003757	NES10781826	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30972657					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47003757	NES10781826	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68923326 () rs orientation: forward

Symbol	Name	Function Class
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29518	transcription start site region 29518	94 bp upstream
Tssr29519	transcription start site region 29519	681 bp upstream
Tssr29520	transcription start site region 29520	699 bp upstream