rs30972659 SNP Detail

Summary

• ID
  rs30972659
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68923384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCTGCA GTGTACTTAC
  ATATAATAAA TGAATAAATC TTTAAAAAAA AGAAAACCAC TAGATTGGGC ACCTCTTTAT
  ATATGTGGGT ATTCTTAAAT ATATATGTGT GATTTTAGAC CTTTTACATA AAATATCCTT
  GAACTACTTG TTAAGTATCC TTTGACTGGG ATTACCCTGT TCTCACTGAA GAGAGTTAGC
  K
  GCTGTGTGTA TACAAAGTGT ATGAATGTGA CTCTCTTAAA GGGTGAAGTT GAACAGATTG
  CTATGATGAA ACCCAAAGGC CAGACTGAAC ATGATGAAGG TATGCTTGAG TATTTAGAAG
  ATATAATTGG CTGTGGACGG CTAAATGAAC CTATTAAAGT CTTGTGTCGG AGAGTTGAAA
  TATTAAATGA ACACAGAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47003759	NES10781827	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30972659					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47003759	NES10781827	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68923384 () rs orientation: forward

Symbol	Name	Function Class
Rr578111	regulatory region 578111	1037 bp proximal
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29518	transcription start site region 29518	36 bp upstream
Tssr29519	transcription start site region 29519	623 bp upstream
Tssr29520	transcription start site region 29520	641 bp upstream