rs30972663 SNP Detail

Summary

• ID
  rs30972663
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68923963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTCTCAA AAACAAAACG
  GGGTGGGGGG GGGGTGGGGG GGTGGGGGGG GCTGTCTTAT TTGCAGAACA GCTGAATTTA
  CTAAGTTGAA TACTAATGTT CATACTTAAT CAAACCCACT ATCTTTATAT TAGCCTTTGC
  GTGACATGCT TTTATTTAGT GTTTAATATT TCATGTTGGT TTTACATATG AAATGTTTTA
  M
  ATCTTTATTT AATGTTTGTA GTTAAATAGA GTGAAAATGG TAGAAAAGGA GAAGGATGCA
  CTAGAGGGAG AGAAAAACAT AGCCATTGAG TTCCTTACCC TGGAAAATGA AATGTTTAAG
  AAAAAGAATC ACATCTGTCA ATACTACATG TAAGTACTCT GCTCAGCTTT ACACATTTCT
  AAGCACCAAA GCCTTTTCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss47003765	NES10781814	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30972663					SNP	C	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47003765	NES10781814	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68923963 () rs orientation: forward

Symbol	Name	Function Class
Rr578111	regulatory region 578111	458 bp proximal
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29518	transcription start site region 29518	522 bp downstream
Tssr29519	transcription start site region 29519	44 bp upstream
Tssr29520	transcription start site region 29520	62 bp upstream