rs30972724 SNP Detail

Summary

• ID
  rs30972724
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98938191 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCTCC GTAGGAGCCA CGCCTGACTC
  R
  TGAACAGTTT TCAAGGTGCG CTCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46464939	mCV22891910	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G	A
ss148463544	ENSMUSSNP2611426	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	T		T
ss325079643	CHEV_15_98870741	CHEVERUD	SCREENING_POP	r	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30972724					SNP	A	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98938191 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi7689	CpG island 7689	within coordinates
Gm41399	predicted gene, 41399	926 bp upstream
Gm62755	predicted gene, 62755	255 bp downstream
Rr509290	regulatory region 509290	within coordinates
Rr509291	regulatory region 509291	175 bp proximal
Rr509292	regulatory region 509292	691 bp proximal