rs30972924 SNP Detail

Summary

• ID
  rs30972924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:120070579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATCTTGG GGCTGGAGAG
  ATGGCTCAGT AGTTAACAGC ACTGACTGCT TTTCCAGAGG TTCTGAGTTC AATTCCCAGC
  AACCACATGG TGGCTCACAA CCATCCTTAA TGGGATCTGA TGCCTTCTTC TGGTGGGTCT
  GAAGACAGCT ACAGTGTACT CATATACATT AAAAAAAAAA AGTATTCTTG GAGTAGGCTT
  Y
  TTGTTTTAAT CTGTGATGAG ATTGGGTTGA AGCAGGCTCA GGGTCAGGTA AACAACTCGC
  TTAGTAACAA AATGACTTAG AGAACCCTTC TCAAACCTCT GGGTGGAAAC CAGAGTGGAT
  TTCACAAAGT AACACTTCAT CAGAAATGTG CCAACGAAGG ATAGAAATGT GTCCAAACAC
  AGGGATAGGC CGAGGTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48002088	NES12007355	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30972924					SNP	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48002088	NES12007355	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:120070579 () rs orientation: forward

Symbol	Name	Function Class
Rr385393	regulatory region 385393	444 bp downstream
Rr439963	regulatory region 439963	378 bp distal
Rr439964	regulatory region 439964	479 bp distal
Rr439965	regulatory region 439965	63 bp distal