rs30972926 SNP Detail

Summary

• ID
  rs30972926
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:120070632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGGTTC TGAGTTCAAT
  TCCCAGCAAC CACATGGTGG CTCACAACCA TCCTTAATGG GATCTGATGC CTTCTTCTGG
  TGGGTCTGAA GACAGCTACA GTGTACTCAT ATACATTAAA AAAAAAAAGT ATTCTTGGAG
  TAGGCTTCTT GTTTTAATCT GTGATGAGAT TGGGTTGAAG CAGGCTCAGG GTCAGGTAAA
  S
  AACTCGCTTA GTAACAAAAT GACTTAGAGA ACCCTTCTCA AACCTCTGGG TGGAAACCAG
  AGTGGATTTC ACAAAGTAAC ACTTCATCAG AAATGTGCCA ACGAAGGATA GAAATGTGTC
  CAAACACAGG GATAGGCCGA GGTTATTCGT GACCAGACAG CTGAGTGGAA GCCATGTGAC
  TGTCAGCTGA AGCTCTCGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48002090	NES12007359	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30972926					SNP	C	C	C	C	G	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48002090	NES12007359	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:120070632 () rs orientation: forward

Symbol	Name	Function Class
Rr385393	regulatory region 385393	497 bp downstream
Rr439963	regulatory region 439963	431 bp distal
Rr439964	regulatory region 439964	532 bp distal
Rr439965	regulatory region 439965	116 bp distal