rs30972930 SNP Detail

Summary

• ID
  rs30972930
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:120070735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCATATA CATTAAAAAA
  AAAAAGTATT CTTGGAGTAG GCTTCTTGTT TTAATCTGTG ATGAGATTGG GTTGAAGCAG
  GCTCAGGGTC AGGTAAACAA CTCGCTTAGT AACAAAATGA CTTAGAGAAC CCTTCTCAAA
  CCTCTGGGTG GAAACCAGAG TGGATTTCAC AAAGTAACAC TTCATCAGAA ATGTGCCAAC
  R
  AAGGATAGAA ATGTGTCCAA ACACAGGGAT AGGCCGAGGT TATTCGTGAC CAGACAGCTG
  AGTGGAAGCC ATGTGACTGT CAGCTGAAGC TCTCGGGTAG AACCCAGGGA GATTTTTATT
  TATTGGTTTG TTTTTGAGAC AAGGTCCTGG CTAGCCTGGT ACCCGGAGAG CCAGCTGGCA
  TCAAACTTGC AGTCATGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48002094	NES12007362	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30972930					SNP	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48002094	NES12007362	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:120070735 () rs orientation: forward

Symbol	Name	Function Class
Rr385393	regulatory region 385393	600 bp downstream
Rr439963	regulatory region 439963	534 bp distal
Rr439964	regulatory region 439964	635 bp distal
Rr439965	regulatory region 439965	219 bp distal