rs30973557 SNP Detail

Summary

• ID
  rs30973557
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68924509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAATCTCC CCCTCCGTGT GCTTTTTCTT TTGTTTTAGT
  TACTGTGCAA GGGTAGATGA GTACTAACTC ACCCACTCAG ATAGGGTGAC AACTTCCTCT
  M
  AGAGGTTCCA GATCTCAAAC TCAGGTCATC AGGTTTGTCC TGCAATTCCT TCTGCTCTCT
  GAACCATCTC CCTAGTCTAT GGTGCATTTT TGTTTGGTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45544849	mCV24616633	ABI	CRAMUS_MOUSE	f	SNP		A	C					A		C
ss47003769	NES10781816	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C		A	C	A	C		A	C	C	A		A
ss135264526	ENSMUSSNP1406787	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
ss320791747	CHEV_3_68821098	CHEVERUD	SCREENING_POP	f	SNP													C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30973557					SNP	A	A	C	C	C	A	C	A	A	C	A	C	C	A	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47003769	NES10781816	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68924509 () rs orientation: forward

Symbol	Name	Function Class
Rr578111	regulatory region 578111	within coordinates
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29518	transcription start site region 29518	1068 bp downstream
Tssr29519	transcription start site region 29519	490 bp downstream
Tssr29520	transcription start site region 29520	469 bp downstream