rs30973561 SNP Detail

Summary

• ID
  rs30973561
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68925324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAATTTA CCATTTAATA
  TTTTCAGATG ACAAGGGTGG ACCATAAGTA ACTGAAATCA TGAAAAACAA AAACATGAGA
  CACTGCTATA CACTATTAAA TTCATATGAT AGATTTAATT TATTAACTGA ACCAATTTTG
  TTCTCAAATT CTACCTAGCC TTAAGCCAGA GGTCCTACCC CAATCACTCG CATAGCCCTG
  M
  CTTGCTATAA ATTGAGGAAT ATTTTAGAGA CAGCTGATTT TACTAATGGC ATTTTACACT
  CTCTGACTTT TCCCTCTAGT TATGATCTGC AGAATAGAAT TGCTGAAATA ACGACTCAAA
  AGGAAAAAAT TCATGAAGAT ACTAAAGAAA TTACTGAGAA GAGCAATGTG CTTTCCAATG
  AAATGAAAGC GAAGAATTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47003773	NES10781800	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30973561					SNP	C	C	C	C	C	A	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47003773	NES10781800	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68925324 () rs orientation: forward

Symbol	Name	Function Class
Rr578111	regulatory region 578111	374 bp distal
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29518	transcription start site region 29518	1883 bp downstream
Tssr29519	transcription start site region 29519	1305 bp downstream
Tssr29520	transcription start site region 29520	1284 bp downstream
Tssr29521	transcription start site region 29521	1260 bp upstream