rs30973797 SNP Detail

Summary

• ID
  rs30973797
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050424 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TACAGTGGAC ATTTCTAAAT TCTCCACCTT TTTCAATTTT CCTCGCCATA TTTCAAATCC
  TAAAGTGTGT ATTTCTAATT TTTTGTGATT TTCAGTTTTC TCACCATATT CCATGTACTA
  CAGTGTGCAT TTCTCATTTT TCAAGTTTTT CAGTGATTTC GTCATTTTTC AAGTTGTTAA
  GTGGATGTTT CTCATTTTCC ATGATTTTCA GTTTTTTTGC CATATTCCAC GCCTACAGTG
  GACATTTGTA AATTATCCAC CTTTTTCAGT TTTCCTCGCC ATATTTCACG TCCTAAAGTG
  W
  GTATTTCTTA TTTTCCGTGA TTTTCAGTTT TCTAGCCACA TTCCAGGTCC TACACTGTGC
  ATTTCGCATT TTTCACGTTT TTCAGTCATT TCGTCATTTT TCAAGTCGTC AAGTGGATGT
  TTCTCATTTT CCATGATTTT CTGTTTTCTT GCCATATTCC AAGTCCTACA GTGGATATTT
  ATTAATTTTC CACCTTTTTC AGTTGTCCTC GCCATATAAC ACTTCGTAAA GAGTGTATTT
  CTCATTTTCC GTGATTTTCA GTTTTCTCGC CATATTCCAG GTCCTACACT GTGCATTTCT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss46464752	mCV25361507	ABI	CRAMUS_MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs30973797					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050424 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1902 bp downstream
Tssr4285	transcription start site region 4285	1877 bp upstream
Tssr4286	transcription start site region 4286	1773 bp downstream
Tssr4287	transcription start site region 4287	1738 bp upstream
Tssr4288	transcription start site region 4288	1710 bp downstream
Tssr4289	transcription start site region 4289	1615 bp upstream
Tssr4290	transcription start site region 4290	1608 bp downstream
Tssr4291	transcription start site region 4291	1528 bp upstream
Tssr4292	transcription start site region 4292	1492 bp downstream
Tssr4293	transcription start site region 4293	1457 bp upstream
Tssr4294	transcription start site region 4294	1455 bp downstream
Tssr4295	transcription start site region 4295	1382 bp upstream
Tssr4296	transcription start site region 4296	1419 bp downstream
Tssr4297	transcription start site region 4297	1355 bp upstream
Tssr4298	transcription start site region 4298	1337 bp downstream
Tssr4299	transcription start site region 4299	1297 bp downstream
Tssr4300	transcription start site region 4300	1259 bp downstream
Tssr4301	transcription start site region 4301	1241 bp upstream
Tssr4302	transcription start site region 4302	1229 bp upstream
Tssr4303	transcription start site region 4303	1174 bp downstream
Tssr4304	transcription start site region 4304	1145 bp upstream
Tssr4305	transcription start site region 4305	1076 bp downstream
Tssr4306	transcription start site region 4306	1057 bp upstream
Tssr4307	transcription start site region 4307	1036 bp downstream
Tssr4308	transcription start site region 4308	1004 bp upstream
Tssr4309	transcription start site region 4309	960 bp upstream
Tssr4310	transcription start site region 4310	913 bp downstream
Tssr4311	transcription start site region 4311	885 bp upstream
Tssr4312	transcription start site region 4312	805 bp downstream
Tssr4313	transcription start site region 4313	746 bp upstream
Tssr4314	transcription start site region 4314	734 bp downstream
Tssr4315	transcription start site region 4315	710 bp downstream
Tssr4316	transcription start site region 4316	683 bp upstream
Tssr4317	transcription start site region 4317	607 bp downstream
Tssr4318	transcription start site region 4318	583 bp upstream
Tssr4319	transcription start site region 4319	526 bp upstream
Tssr4320	transcription start site region 4320	462 bp downstream
Tssr4321	transcription start site region 4321	434 bp upstream
Tssr4322	transcription start site region 4322	335 bp downstream
Tssr4323	transcription start site region 4323	300 bp upstream
Tssr4324	transcription start site region 4324	270 bp downstream
Tssr4325	transcription start site region 4325	219 bp downstream
Tssr4326	transcription start site region 4326	181 bp upstream
Tssr4327	transcription start site region 4327	178 bp downstream
Tssr4328	transcription start site region 4328	96 bp downstream
Tssr4329	transcription start site region 4329	98 bp upstream
Tssr4330	transcription start site region 4330	5 bp upstream
Tssr4331	transcription start site region 4331	29 bp downstream
Tssr4332	transcription start site region 4332	135 bp downstream
Tssr4333	transcription start site region 4333	147 bp upstream
Tssr4334	transcription start site region 4334	169 bp downstream
Tssr4335	transcription start site region 4335	316 bp downstream
Tssr4336	transcription start site region 4336	320 bp upstream
Tssr4337	transcription start site region 4337	393 bp downstream