rs30974475 SNP Detail

Summary

• ID
  rs30974475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68925617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGAATTG CTGAAATAAC
  GACTCAAAAG GAAAAAATTC ATGAAGATAC TAAAGAAATT ACTGAGAAGA GCAATGTGCT
  TTCCAATGAA ATGAAAGCGA AGAATTCAGC TGTAAAGGAT GTAGAAAAGT AATAATCTCT
  GAGAAAGTAT TGAATATTGA AATTCAATTT CCACATGGCT ACATGTAAAC TTACTACAAA
  Y
  ACATTGACTA TAATACATTC CTAGGAAAGA AATCAGTTCT TTTAGGTACC ACCACTCTGC
  ACTAAACTCA TTGTTGCAAT TGCCCAACTT TGAAGTCATG CTACTGGGCA TACCTTTTCT
  CTGTTGGTAT AATAACATCC AAAGCTGAAA CAAGCATTTA ACCTGACCCA CTAGTCCTAA
  TGGTTTACAA ATTTAATCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47003777	NES10781802	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30974475					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47003777	NES10781802	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68925617 () rs orientation: forward

Symbol	Name	Function Class
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29519	transcription start site region 29519	1598 bp downstream
Tssr29520	transcription start site region 29520	1577 bp downstream
Tssr29521	transcription start site region 29521	967 bp upstream