rs30974478 SNP Detail

Summary

• ID
  rs30974478
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68925861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTACCACC ACTCTGCACT
  AAACTCATTG TTGCAATTGC CCAACTTTGA AGTCATGCTA CTGGGCATAC CTTTTCTCTG
  TTGGTATAAT AACATCCAAA GCTGAAACAA GCATTTAACC TGACCCACTA GTCCTAATGG
  TTTACAAATT TAATCTAGAA ATCAAATTTT GGTTATTTTA GATAGACTTT AAAAATTATC
  W
  CTCTGTGCCA ACCATCATAG ACAATAGTAT CTTTGACTTA AGAGAGTTTT CATTTTTTTT
  TAACTTTTAC TTTCATGGAC AAATTTTTAT GAGCTTAAAT TTAGTTAAAG CACTTGGGAG
  GCATAGACAA GTGGGCCTCT GATTTTGAGG CCAGCTCTGG TTTACAGAGC AAGTTCCAGG
  ACAGCCAAGG TTACAGAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47003781	NES10781804	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30974478					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47003781	NES10781804	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68925861 () rs orientation: forward

Symbol	Name	Function Class
Rr578111	regulatory region 578111	911 bp distal
Rr578112	regulatory region 578112	1863 bp proximal
Rr578113	regulatory region 578113	1960 bp proximal
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29519	transcription start site region 29519	1842 bp downstream
Tssr29520	transcription start site region 29520	1821 bp downstream
Tssr29521	transcription start site region 29521	723 bp upstream