rs30974609 SNP Detail

Summary

• ID
  rs30974609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143817559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGTGACA CTGCTTCCTT
  TCAGGGCAGG CCTGAGCTGA TTCAGAGGGA GTGAATGTGC CTGTTGGCCT CCTGCCAACT
  CAGAGGCGGG CACACTATGA CTCCATCTCC TATTGCCTGG GCCATGACCA AGGGCATTTT
  GGTTTCTGTG TGAAGCTTTA TGGAGCTTGC TCTGAGATGG CGAATGGAAT CTCTTGACTG
  Y
  ACAGCGTCCT TTCTAGTAAC AGAACATAGC TACAGAATAT AAAACCCTGA GAGGCCTTTG
  TACTAATGCC AAACTTATAC CTGAAATTTA TTTATAAAAC CTTGGTTTAA AAAGAGCGAT
  AGGAGCCAAT TGGGCTGCAA TTATTTCTTC CCCTTTTCTT GAGTTTTTCC TTCTTACAGT
  CCAGGCATCT GGAGTGCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49688985	NES12985224	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30974609					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49688985	NES12985224	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143817559 () rs orientation: forward

Symbol	Name	Function Class
Gm41964	predicted gene, 41964	within coordinates
Rr419968	regulatory region 419968	1 bp distal